Download gdc with manifest files

NOTE: To download a project's manifest file click on the Download Manifest button located on the home page of the project, just below the four status charts. A manifest will be generated for the entire project or if previous files have already been upload only the files that remain to be uploaded. A manifest for individual files can also be downloaded from the transaction tab and browse tab pages of the submission portal's project. This will create a popup window that will redirect to the eRA Commons login page.

Then navigate to the path containing the executable using the 'cd' command. These menus are displayed when the GDC Data Transfer Tool is run with flags -h or --help for any of the main arguments to the tool. If a failure occurs, the program will stop.

A lower save interval will result in more frequent printout but lower performance. The DTT has the ability to save and reuse configuration parameters in the format of a flat text file via a command line argument.

A simple text file needs to be created first with an extension of either txt or dtt. The supported section headers are upload and download which can be used independently of each other or used in the same configuration file. Each section header corresponds to the main functions of the application which are to either download data from the GDC portals or to upload data to the submission system of the GDC. The configurable parameters are those listed in the help menus under either download or upload displayed under the output tabs.

This command line flag can be used with either the download or upload application feature to display what settings are active within a custom data transfer tool configuration file.

To do this, enter the UUID s after the download command: gdc-client download 22af7a-8dbaae9a1f Multiple UUIDs can be specified, separated by a space: gdc-client download ea-4fbd-8cecdc1bd fb3ebacb4d9-eba92a4c3 Resuming a Failed Download The GDC Data Transfer Tool supports resumption of interrupted downloads.

Note: This method supports downloading a limited number of files at one time. To download a large number of files, please use POST. If the? Clicking the link will bring the user to the File Summary Page. Cases : How many cases does the file contain. Clicking the link will bring the user to the Case Summary Page. Project : The Project that the file belongs to. Clicking the link will bring the user to the Project Summary Page. Category : Type of data.

Format : The file format. Size : The size of the file. Annotations : Whether there are any annotations. Download Options The following buttons on the Cart page allows users to download files that are related to the ones in the cart.

Metadata: GDC harmonized clinical, biospecimen, and file metadata associated with the files in the cart. A manifest file contains a list of the UUIDs that correspond to the files in the cart.